SubtiBank SubtiBank
ydfD [2018-06-19 17:44:52]
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ydfD [2018-06-19 17:44:52]

similar to transcriptional regulator ([SW|MocR/ GabR family])
locus
BSU05370
pI
9.10
mw
54.07 kDa
protein length
482 aa Sequence Blast
gene length
1446 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.2|Transcription factors and their control] → [category|SW 3.4.2.6|Transcription factor/ other/ based on similarity]

    • Gene

    Coordinates
    583,589 → 585,037

    The protein

    Protein family

  • [[MocR/ GabR family]] [Pubmed|22020104]

    • Paralogous protein(s)

  • [protein|6A3F08CD939CCDEC1F784D658B815A6D0E1AAC3D|YisV]

    • [SW|Domains]

  • N-terminal DNA-binding helix-turn-helix motif; C-terminal domain is homologous to PLP-binding large domain of aminotransferases.

    • Structure

  • [PDB|1WST] (aminotransferase from Thermococcus profundus, 30% identity)

    • Biological materials

    Mutant

  • MGNA-C144 (ydfD::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2142 NBRP B. subtilis, Japan]
  • BKE05370 (Δ[gene|B1A95EAE40AFA40BF12EE9B41287921417A39562|ydfD]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE05370 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATAGAATCGGTCTCCTTAA, downstream forward: _UP4_TAACTTTTATATCCTTAAAT
  • BKK05370 (Δ[gene|B1A95EAE40AFA40BF12EE9B41287921417A39562|ydfD]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK05370 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATAGAATCGGTCTCCTTAA, downstream forward: _UP4_TAACTTTTATATCCTTAAAT

    • References

  • 11756427,22020104